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High Performance Computing

Infrastructure

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OBJECTIVES AND SPECIFICATIONS

Rapid quality control, error correction and assembly of genome-scale DNA & RNA sequence datasets.
Sequence motif and similarity-based identification of functional genetic elements for genome annotation.
Understanding the principles of self-assembly of oligomers in various environments via all-atom and coarse-grained simulations.
Understanding the working principles of proteins by using molecular dynamics simulations.

SUNUM | High Performance Computing

SUNUM | High Performance Computing

SUNUM | High Performance Computing

AREAS OF IMPACT AND APPLICATIONS

Genome-wide identification of mutations and polymorphisms for population genetics studies
Design and in silico verification of Molecular Markers for crop breeding
Investigation of point mutations that lead to diseased states in proteins
Drug design
Design of nanoparticles as nanoscopic delivery vehicles

EQUIPMENT LIST

1 head node and 16 compute node HPC server
Total core number: 320
Total Ram: 4 TB
Total Disk: 80 TB
Total GPU: 12 x Nvidia K20 GPU
Network: 56 Gb/s FDR InfiniBand
2 redundant air-condition + Chiller

Sabancı Sunum

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